Pedobacter
| Pedobacter | |
|---|---|
| Scientific classification | |
| Domain: | Bacteria |
| Kingdom: | Pseudomonadati |
| Phylum: | Bacteroidota |
| Class: | Sphingobacteriia |
| Order: | Sphingobacteriales |
| Family: | Sphingobacteriaceae |
| Genus: | Steyn et al. 1998 |
| Species | |
|
See text | |
Pedobacter is a genus of Gram-negative soil-associated bacteria. Species including Pedobacter heparinus, formerly known as Flavobacterium heparinum, produce heparinase and are capable of using heparin as their sole carbon and nitrogen source.[1]
In molecular biology, Pedobacter has also been identified as a contaminant of DNA extraction kit reagents and ultra-pure water systems, which may lead to its erroneous appearance in microbiota or metagenomic datasets.[2]
- ^ Shaya, D (2006). "Crystal structure of heparinase II from Pedobacter heparinus and its complex with a disaccharide product". J. Biol. Chem. 281 (22): 15525–35. doi:10.1074/jbc.m512055200. PMID 16565082.
- ^ Salter, S; Cox, M; Turek, E; Calus, S; Cookson, W; Moffatt, M; Turner, P; Parkhill, J; Loman, N; Walker, A (2014). "Reagent contamination can critically impact sequence-based microbiome analyses". bioRxiv 10.1101/007187.